Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  120 bits (302), Expect = 5e-32
 Identities = 96/332 (28%), Positives = 160/332 (48%), Gaps = 26/332 (7%)

Query: 16  PTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKE 75
           P  ++L K ++  G  SRR+ +  I Q R+ +NG++  +G +V   D + IDGK ++ +E
Sbjct: 14  PAGEKLQKVLARIGVGSRRDVEAWITQKRIKVNGVEATLGQRVDLHDAITIDGKVIKREE 73

Query: 76  RPI----YIALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLT 127
                   I  NKP G  CT + D  G    F    K    R   IGRLD  + GL+  T
Sbjct: 74  AAESVRRVIMYNKPDGEICTRD-DPEGRPTVFDKMPKPKEGRWINIGRLDINTTGLLMFT 132

Query: 128 NDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQ--- 184
            DG++ N+++      ++EY VRV   +  E I ++ +GV + D    P K T   Q   
Sbjct: 133 TDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLEDG---PAKFTDIKQAPG 189

Query: 185 -----YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDG-IPNGKWRYLSEAE 238
                + +  V+ +G NR++RR+ E+ G  V +L+RVR   + L+  +P G+WR +S+ E
Sbjct: 190 GEGFNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMGRWREMSQYE 249

Query: 239 VSEILAMCEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQ 298
           V +IL+     +        A+S D ++R    +   SR   +  +  R  +      A 
Sbjct: 250 V-DILSAEVGLTPVAMPQMNAKSKDKLER---MQRKSSRPVARTERVARTLRPALNAPAT 305

Query: 299 EFRHAPNSK-KAQRRPSSPSSNTASGSKPTPR 329
             R +   + + +RRP++PS      +   PR
Sbjct: 306 GGRISREPQIEGERRPTAPSRQEGERAPRAPR 337