Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., RNA-binding protein S4 from Pseudomonas simiae WCS417

 Score = 89.4 bits (220), Expect = 8e-23
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 12/230 (5%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+K + E   CSRREA+  IE G V+++G +  E   KVT Q +V +D     +   P+
Sbjct: 6   RLSKRLIELVGCSRREAELFIEGGWVSVDGEVIDEPQFKVTTQ-KVALDPDAKATVPEPV 64

Query: 79  YIALNKPTGITCTTER-DVPGNIVD---------FIGHHKRIFPIGRLDKPSDGLIFLTN 128
            I L+ P G+   T    +    +            GH  R+     L   + GL+  T 
Sbjct: 65  TILLHAPAGVDAETAMASISAETLSEEHRFGKRPLKGHFLRLTASADLQAKASGLLVFTQ 124

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFR 188
           D  I+ K+       E+EYVV V+  +    + +++ G+          K + + +   R
Sbjct: 125 DWKILRKLTADAAKIEQEYVVEVEGDMVAHGLNRLNHGLTYKGKELPAVKASWQNENRLR 184

Query: 189 IVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAE 238
             +       I   CEA+G +V  +RR+RI  +++  +P G+WRYLS  E
Sbjct: 185 FAMKNPQPGVIALFCEAVGLKVIAIRRIRIGGVSIGKVPVGQWRYLSGKE 234