Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) from Variovorax sp. SCN45

 Score =  110 bits (276), Expect = 7e-29
 Identities = 91/327 (27%), Positives = 152/327 (46%), Gaps = 23/327 (7%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLR---SKER 76
           +L+K +++ G  SR E ++LI QGR+++N     +G ++   D+V I+GKP+R   +   
Sbjct: 197 KLHKVLAQAGLGSRLEMEQLILQGRISVNNEPAHIGQRIQYGDQVKINGKPIRYRIAPPP 256

Query: 77  PIYIALNKPTGITCTTERDVPGNIVDFIGHHKRI-----FPIGRLDKPSDGLIFLTNDGD 131
           P  IA +KPTG   T   D P N         R+       +GRLD  ++GL+  ++ GD
Sbjct: 257 PRVIAYHKPTGEVVT--HDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSSSGD 314

Query: 132 IVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTV----TLPCKVTQETQYSF 187
           + N+++      E+EY VRV   +T E  +++  GV + D +    T+     + +   +
Sbjct: 315 LANQLMHPRFGLEREYAVRVLGALTSEEKQKLLDGVRLDDGMAQFGTIEDGGGEGSNCWY 374

Query: 188 RIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMC 246
           R+ +++G NR++RR+ E++G+ V +L R+R   + L  G+  G W  L E    +I A+ 
Sbjct: 375 RVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDE---RDIRALF 431

Query: 247 EDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNS 306
           + S G        Q G       D         NK+ +  RN     G   +E R     
Sbjct: 432 QASGGAAARPGPQQRGP----GQDGGGNGRNGRNKKRRGNRNGGGQGGGQPREMRDDGGR 487

Query: 307 KKAQ-RRPSSPSSNTASGSKPTPRTGG 332
            +A    P            P P  GG
Sbjct: 488 GEAPIPNPLGDGRPPRGDRGPRPNRGG 514