Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., Pseudouridine synthase from Variovorax sp. SCN45

 Score =  127 bits (319), Expect = 3e-34
 Identities = 87/263 (33%), Positives = 121/263 (46%), Gaps = 44/263 (16%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERPIY 79
           RLNK ++E   CSRREAD+ I  G V +NG   E+G KVT  D + ID      +   + 
Sbjct: 13  RLNKRMAELKMCSRREADEWIANGWVKVNGRPAEMGVKVTPSDRIEIDKAAKGQQANQVT 72

Query: 80  IALNKPTGITCTTERDVPGNIVDFIGHHKR-----------------IFPIGRLDKPSDG 122
           I +NKP G       D     V       R                 + P GRLD  S G
Sbjct: 73  ILINKPIGYVSGQAEDGHDPAVVLFTPQNRWAEDNARFFFSPQQLRGLAPCGRLDIDSIG 132

Query: 123 LIFLTNDGDIVNKILRAGNNHEKEYVVRV-------------------DKPIT------- 156
           L+ +T DG I  +++   +  EKEY+VRV                   D P+T       
Sbjct: 133 LLVMTQDGRIARQLIGEDSVMEKEYLVRVAYHGLGQPAPTGQLVRMDDDDPVTTNVQAVF 192

Query: 157 -PEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRR 215
            P  + ++  G+++      P +V  +     R VLT+G  RQIRRMCE +G +V  L+R
Sbjct: 193 PPAMLARLRHGLSLDGQALKPARVEWQNPEQLRFVLTEGKKRQIRRMCELVGLKVVGLKR 252

Query: 216 VRIMNITLDGIPNGKWRYLSEAE 238
           VRI  + L  +P G+WRYL+  E
Sbjct: 253 VRIGKVMLGNLPVGQWRYLAPHE 275