Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

 Score = 87.0 bits (214), Expect = 4e-22
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 18/240 (7%)

Query: 21  LNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVC--IDGKPLRSKERPI 78
           L   +   G+ +RR    L++QG VT+ G          + D +   + G P    E+  
Sbjct: 3   LQDILYTQGFGTRRVCAGLVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKA- 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGHHKRIFP----------IGRLDKPSDGLIFLTN 128
           Y+ L+KP G  C+ +     +I   +    R+ P          IGRLD+ + GL+ LT+
Sbjct: 62  YLMLHKPAGTECSQKPSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTD 121

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT---QETQY 185
           DG  ++K+    ++  K Y V    P+    I ++ +GV +LD    P +      ++  
Sbjct: 122 DGQFIHKMGSPKHHVPKVYEVTAKHPVDEAQIAKLLAGV-VLDDDPKPVRAAACESDSPL 180

Query: 186 SFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEILA 244
             R+ LT+G   Q++RM  A+G  V  L R RI ++ L + +  G+WR+L+  EV+ + A
Sbjct: 181 HLRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEVAALRA 240