Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., pseudouridine synthase from Variovorax sp. OAS795

 Score =  131 bits (330), Expect = 2e-35
 Identities = 88/267 (32%), Positives = 123/267 (46%), Gaps = 44/267 (16%)

Query: 16  PTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKE 75
           P   RLNK ++E G CSRREAD+ I  G V +NG   E+G KVT  D + +D      + 
Sbjct: 6   PAPIRLNKRMAELGLCSRREADEWIAHGWVKVNGKPAEMGVKVTPSDRIEVDKAAKGQQA 65

Query: 76  RPIYIALNKPTGITCTTERDVPGNIVDFIGHHKR-----------------IFPIGRLDK 118
             + I +NKP G       D     V       R                 + P GRLD 
Sbjct: 66  NQVTILINKPIGYVSAQAEDGHEPAVTLFTPQNRWAEDNTRFFFSPQQLRGLAPCGRLDI 125

Query: 119 PSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRV-------------------DKPIT--- 156
            S GL+ +T DG I  +++   +  EKEY+VRV                   D P+T   
Sbjct: 126 DSIGLLVMTQDGRIARQLIGEDSVMEKEYLVRVAYHGLGQPAPPGQLVRMDDDDPVTTNV 185

Query: 157 -----PEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIVLTQGLNRQIRRMCEALGYEVF 211
                P  + ++  G+++      P +V  +     R VLT+G  RQIRRMCE +G +V 
Sbjct: 186 QAVFPPAMLARLRHGLSLDGQPLKPARVEWQNPEQLRFVLTEGKKRQIRRMCELVGLKVV 245

Query: 212 KLRRVRIMNITLDGIPNGKWRYLSEAE 238
            L+RVRI  + L  +P G+WRYL+  E
Sbjct: 246 GLKRVRIGKVMLGNLPVGQWRYLAPHE 272