Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score = 99.4 bits (246), Expect = 8e-26
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 9/230 (3%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGS-KVTEQDEVCIDGKPLRSKERPI 78
           RL+KF+ +    +R+EA +L++ G VT++ +  + G+ K+ E   V   G+ + +   P 
Sbjct: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREI-TLHGPR 60

Query: 79  YIALNKPTGITCTTE---RDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDGDIVNK 135
           YI ++KP G+ C+ E         ++D +      F  GRLD  + GL+ +T+DG   ++
Sbjct: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFA-GRLDVDTTGLLLITDDGQWSHR 119

Query: 136 ILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD--TVTLPCKVTQETQYSFRIVLTQ 193
           +    +  EK Y V +  PI  ++  Q + G+ +     +TLP ++   ++    + + +
Sbjct: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHE 179

Query: 194 GLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEI 242
           G   Q++RM  ALG +V  L R RI  ITLD  +  G++RYL+E EV+ I
Sbjct: 180 GKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229