Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score =  121 bits (303), Expect = 3e-32
 Identities = 90/337 (26%), Positives = 160/337 (47%), Gaps = 27/337 (8%)

Query: 13  MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLR 72
           ++ P+ ++L K ++  G  SRR+ +  I QGR+ +NG++  +G +V   D + +DGK ++
Sbjct: 11  ITPPSGEKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIAVDGKLIK 70

Query: 73  SKERP----IYIALNKPTGITCTTERDVP---GNIVDFIGHHK--RIFPIGRLDKPSDGL 123
            +E        I  NKP G  CT  RD P     + D +   K  R   IGRLD  + GL
Sbjct: 71  REEAAEATRRVIMYNKPDGEICT--RDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGL 128

Query: 124 IFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT--- 180
           +  T DG++ N+++      ++EY VRV   +  E I ++ +GV + D    P K T   
Sbjct: 129 LLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDG---PAKFTDIQ 185

Query: 181 -----QETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDG-IPNGKWRYL 234
                +   + +  V+ +G NR++RR+ E+ G  V +L+RVR   + L+  +P G+WR +
Sbjct: 186 KAPGGEGFNHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREM 245

Query: 235 SEAEVSEILAMCEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHG 294
           ++ E+  + A      G +  +  A       +    +   +R   +  + R     + G
Sbjct: 246 TQGEIDILAA----EVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERVRNLRPAHEG 301

Query: 295 KNAQEFRHAPNSKKAQRRPSSPSSNTASGSKPTPRTG 331
               E       ++A R+P+  S+     S+   R G
Sbjct: 302 AATGERPARQPREEAPRKPTRGSTVAERPSEMRKRPG 338