Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., S4 domain protein from Pseudomonas putida KT2440

 Score = 90.9 bits (224), Expect = 3e-23
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 18/239 (7%)

Query: 13  MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGL---QPEVGSKVTEQDEVCIDGK 69
           MS+P   RL+K + E   CSRREA++ IE G VT++G+   QP+   KV +Q    + G 
Sbjct: 1   MSEPV--RLSKRLIEQLGCSRREAEQYIEGGWVTVDGVVVEQPQF--KVEQQRVELLPGA 56

Query: 70  PLRSKERPIYIALNKPTGITCTTERDVPG----------NIVDFIGHHKRIFPIGRLDKP 119
              + E P+ + LN+P G+     R               +    GH  R   +  L++ 
Sbjct: 57  RAETLE-PVTLLLNQPAGMDSEDARASMNMGSLSEAHREGVRALHGHFARQACVAPLERG 115

Query: 120 SDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKV 179
           + GL   T D  +  KI       E+E+++ V    TP+ + +++ G    D      K 
Sbjct: 116 ASGLQVFTQDWRVSRKIEADLRRLEQEFIIEVRGETTPQALERLARGAMRNDRELPKAKA 175

Query: 180 TQETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAE 238
           + + +   R+VL      QI  +C  L  E+  +RR+R+  +++  +P G+WRYL+ +E
Sbjct: 176 SWQNETHLRMVLKNPQPGQISELCAYLRLELLGMRRIRLGGVSMGKLPLGQWRYLATSE 234