Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  107 bits (267), Expect = 5e-28
 Identities = 68/243 (27%), Positives = 127/243 (52%), Gaps = 15/243 (6%)

Query: 15  QPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLR-- 72
           Q    +L+K +++ G  SR E ++LI +GR+++NG    +G ++   D + ++GKP+R  
Sbjct: 36  QAESPKLHKVLAQAGMGSRLEMEQLILEGRISVNGEPAHIGQRIQFGDVIKVNGKPVRVR 95

Query: 73  -SKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHKRIF-----PIGRLDKPSDGLIFL 126
            +   P  +A +KP G       D P N         ++       +GRLD  ++GL+ L
Sbjct: 96  MTPPPPRVLAYHKPAGE--VVSHDDPQNRPTVFRRLPKLMQGKWQSVGRLDLNTEGLLLL 153

Query: 127 TNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT----QE 182
           TN G++ N+++      ++EY VRV   ++ E  +++  GV + D V     +     + 
Sbjct: 154 TNSGELANRLMHPRFGLQREYAVRVLGALSNEEKQRLLDGVKLDDGVAQFASIEDGGGEG 213

Query: 183 TQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSE 241
               +R+ + +G NR++RRM EA+G+ V +L R+R   + L  G+  G W  L + +++ 
Sbjct: 214 ANCWYRVTIGEGRNREVRRMFEAVGHAVSRLIRIRYGAVMLPRGLKRGVWLELDDRDIAR 273

Query: 242 ILA 244
           + A
Sbjct: 274 LTA 276