Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., tRNA pseudouridine synthase A (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  117 bits (292), Expect = 6e-31
 Identities = 82/259 (31%), Positives = 119/259 (45%), Gaps = 38/259 (14%)

Query: 18  EKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERP 77
           E RLNK +++ G CSRREAD+ I +G V +NG    +G  V    +V +  +    +   
Sbjct: 115 EVRLNKRMADLGLCSRREADEWIARGWVKVNGQPAVMGQPVPPDAQVEVAPQARHQQSGQ 174

Query: 78  IYIALNKPTGITCTTERDVPGNIVDFIG---------------------HHKRIFPIGRL 116
           + I L+KP G       D        IG                     H + + P GRL
Sbjct: 175 VTILLHKPVGYVSGQPEDGHEAAATLIGAPSQWRGDARMPADGRRFAPEHTRNLAPAGRL 234

Query: 117 DKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVD-KPITPEFI-------------RQ 162
           D  S GL+ LT DG +   ++   +  EKEY+VRV   P  P+               RQ
Sbjct: 235 DIDSTGLLVLTQDGRVARTLIGENSGVEKEYLVRVHFAPNGPQGAGLVAQDVQAVFPARQ 294

Query: 163 MS---SGVNILDTVTLPCKVTQETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIM 219
           ++    G+++      P +V  +     R VLT+G  RQIRRMCE +G  V  L+R+RI 
Sbjct: 295 LALLRHGLSLDGQALRPAQVDWQNPEQLRFVLTEGKKRQIRRMCEQVGLHVVGLKRIRIG 354

Query: 220 NITLDGIPNGKWRYLSEAE 238
            + L  +P G+WR+L   E
Sbjct: 355 RVLLGNLPVGQWRFLGADE 373