Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase RsuA from Pectobacterium carotovorum WPP14

 Score =  112 bits (280), Expect = 9e-30
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 6/229 (2%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGS-KVTEQDEVCIDGKPLRSKERPI 78
           RL+KF+S+    SR    + +   RVT++G   + G+ K++ +  V  DG+PL+ +  P 
Sbjct: 2   RLDKFLSQQLEISRSLVARELHAQRVTVDGEVVKSGAFKLSPEHNVEFDGEPLKQQNGPR 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDF--IGHHKRIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y  LNKP G  C+T+      I+ F  +    ++   GRLD  + GL+ LT+DG   ++I
Sbjct: 62  YFMLNKPQGYVCSTDDPDHPTILYFMDVPVAYKLHAAGRLDIDTTGLVLLTDDGQWSHRI 121

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD--TVTLPCKVTQETQYSFRIVLTQG 194
               +  EK Y+V +++P+  +   Q ++GV + +   +T P  + + T Y  R+ +++G
Sbjct: 122 TSPKHQCEKTYLVTLEQPLAEDTAAQFTAGVQLHNEKNLTKPATLEKITDYVVRLTISEG 181

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLDG-IPNGKWRYLSEAEVSEI 242
              Q++RM  A+G  V +L R RI  I LD  +  G++R LS  E++ +
Sbjct: 182 RYHQVKRMFAAVGNRVVELHRERIGGIYLDSELEPGEYRELSAEEIASV 230