Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., rRNA pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  107 bits (268), Expect = 3e-28
 Identities = 87/295 (29%), Positives = 138/295 (46%), Gaps = 27/295 (9%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQ-PEVGSKVTEQDEVCIDGKPLRSKERP 77
           +R+ K ++  G CSRREA++ IE GRVT+NG +       V   D V +DG PL   E+ 
Sbjct: 52  ERIAKRLARAGLCSRREAERWIEDGRVTVNGHRLSSPACVVGPGDIVIVDGIPLSEPEKT 111

Query: 78  IYIALNKPTGITCTTERDVPGN--IVDFIGHHK-RIFPIGRLDKPSDGLIFLTNDGDIVN 134
                +KP G+  TT +D  G   + D +     R+  +GRLD  S+GL+ LTNDG++  
Sbjct: 112 RLWRYHKPAGLV-TTHKDPEGRPTVFDHLPEGMPRVISVGRLDLNSEGLLLLTNDGELAR 170

Query: 135 KILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYS----FRIV 190
           K+    N   + Y VRV   ++ + + ++ +G+ I      P   T + +        + 
Sbjct: 171 KLELPSNAWLRRYRVRVHGEVSEDALARLENGITIDGMAYGPISATLDRRQGANAWLSVS 230

Query: 191 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEIL------- 243
           L +G NR+IRR+ E LG+ V +L RV      L  +  G    ++   + E +       
Sbjct: 231 LREGKNREIRRVMEYLGWPVSRLIRVSYGPFQLGTLEEGAADEVAGKVLREQMGEGKAVL 290

Query: 244 ---AMCEDSSGTEEASRVAQSGDTIKRATDA--------KLFDSREANKESKARR 287
              A  + +   E+  RVA      K A D         K +++R+A K    RR
Sbjct: 291 KPKAETKSAGEREKEQRVAAKARKQKLAEDKRAASAKKDKPYEARQAGKPDAHRR 345