Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., rRNA pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  115 bits (289), Expect = 8e-31
 Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 14/231 (6%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTL-NGLQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL + I+  GY S+R+   +I+ GRVTL +G   + G+K    D++ +DG+PL      +
Sbjct: 2   RLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKAAH-DDIRVDGEPL-DPPPGL 59

Query: 79  YIALNKPTGITCTTERDVPGNIV------DFIGHHKRIFPIGRLDKPSDGLIFLTNDGDI 132
            + L+KP G TC+T    PG IV       F+  +  + P+GRLD+ S GL+ LT+DG +
Sbjct: 60  VLMLHKPEGYTCSTSD--PGRIVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTDDGPL 117

Query: 133 VNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNIL---DTVTLPCKVTQETQYSFRI 189
            ++I     +  K Y V + +P++ E     +SG  +L    T   P ++      + RI
Sbjct: 118 AHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQTARI 177

Query: 190 VLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVS 240
            +T+G   Q++RM  A+G  V +L R  I  + L  +  G+WR LS AE++
Sbjct: 178 TITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDLGDLAEGQWRPLSPAEIA 228