Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Serratia liquefaciens MT49

 Score =  112 bits (279), Expect = 2e-29
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 16/231 (6%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKV--TEQDEVCIDGKPLRSKER 76
           ++L K ++  G+ SRRE + +IE GRV+++G   ++G +V  T   ++ +DG  +  KE 
Sbjct: 3   EKLQKVLARAGHGSRREIETIIEAGRVSVDGKIAKLGDRVEVTPSMKIRLDGHVVSVKES 62

Query: 77  PIYI----ALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTN 128
              +    A  KP G  CT   D  G    F    K    R   +GRLD  + GL+  T 
Sbjct: 63  EEAVCRVLAYYKPEGELCTRS-DPEGRPTVFDRLPKLRGSRWVAVGRLDVNTSGLLLFTT 121

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTV----TLPCKVTQETQ 184
           DG++ N+++      E+EY VRV   I  E ++Q+S GV + D      T+  +  +   
Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQIDDEKVKQLSKGVQLEDGPAAFRTITFQGGEGIN 181

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYL 234
             + + LT+G NR++RR+ EA+G +V +L RVR  +I L  GIP G W  L
Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIDLPKGIPRGGWTEL 232