Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  110 bits (275), Expect = 3e-29
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+KFI++    SR  A + I   RVT++G +      K+  +  V  DG PL  +  P 
Sbjct: 2   RLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKLLPEHAVAYDGNPLAQQHGPR 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGHHK--RIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y  LNKP G  C+T+      ++ F+      ++   GRLD  + GL+ +T+DG   ++I
Sbjct: 62  YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD--TVTLPCKVTQETQYSFRIVLTQG 194
               ++ EK Y+V ++ P+  +   Q + GV + +   +T P  +   T    R+ +++G
Sbjct: 122 TSPRHHCEKTYLVTLESPVADDTAAQFAKGVQLHNEKDLTKPATLEVITPVQVRLTISEG 181

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEI 242
              Q++RM  A+G  V +L R RI  ITLD  +  G++R L+E E++ +
Sbjct: 182 RYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPGEYRPLTEEEIASV 230