Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  282 bits (721), Expect = 8e-81
 Identities = 153/278 (55%), Positives = 187/278 (67%), Gaps = 3/278 (1%)

Query: 13  MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLR 72
           M   T  RLNK+ISE+G CSRREAD+ IEQG V +NG +  +G +V   D V ++G+ + 
Sbjct: 1   MLTDTSTRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDIVKVNGRLIE 60

Query: 73  SKERP--IYIALNKPTGITCTTERDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDG 130
            +E    + IALNKP GI  TTE     NIVDF+ H KRIFPIGRLDK S GLIFLTN G
Sbjct: 61  PREADDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRIFPIGRLDKDSQGLIFLTNHG 120

Query: 131 DIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIV 190
           D+VNKILRAGN+HEKEY+V VDKPIT EFIR M +GV IL TVT  CKV +E  + FRI 
Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180

Query: 191 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMCEDSS 250
           L QGLNRQIRRMCE  GYEV KL R RIMN++L GIP G+WR L++ E+ ++  + E SS
Sbjct: 181 LVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIERSS 240

Query: 251 GTEEASRVAQSGDT-IKRATDAKLFDSREANKESKARR 287
              +    A+   T IKR   A    + +A   S  +R
Sbjct: 241 SEAKPKAKAKPKTTGIKRPVVAIEKSNEKARPTSSGKR 278