Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., 16S rRNA pseudouridylate 516 synthase (NCBI) from Escherichia coli BW25113

 Score =  112 bits (280), Expect = 9e-30
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+KFI++    SR  A + I   RVT++G +      K+  + +V  DG PL  +  P 
Sbjct: 2   RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGHHK--RIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y  LNKP G  C+T+      ++ F+      ++   GRLD  + GL+ +T+DG   ++I
Sbjct: 62  YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD--TVTLPCKVTQETQYSFRIVLTQG 194
               ++ EK Y+V ++ P+  +   Q + GV + +   +T P  +   T    R+ +++G
Sbjct: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLDG-IPNGKWRYLSEAEVSEIL 243
              Q++RM  A+G  V +L R RI  ITLD  +  G++R L+E E++ ++
Sbjct: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231