Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., pseudouridine synthase from Enterobacter asburiae PDN3

 Score =  280 bits (716), Expect = 3e-80
 Identities = 155/299 (51%), Positives = 193/299 (64%), Gaps = 15/299 (5%)

Query: 16  PTEK-RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPL--R 72
           PT+  RLNK+ISE+G CSRREAD+ IEQG V LNG +  +G +V   D V ++G+ +  R
Sbjct: 3   PTQSTRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVVPGDVVKVNGQVIEPR 62

Query: 73  SKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDGDI 132
             E  ++IALNKP GI  TTE     NIVDF+ H  RIFPIGRLDK S GLIFLTN GD+
Sbjct: 63  DAEDLVFIALNKPVGIVSTTEDGERDNIVDFVNHSSRIFPIGRLDKDSQGLIFLTNHGDL 122

Query: 133 VNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIVLT 192
           VNKILRAGN+HEKEY+V V+KP+T EFIR M +GV IL TVT  CKV +E  ++FRI L 
Sbjct: 123 VNKILRAGNDHEKEYIVTVNKPVTDEFIRGMGAGVPILGTVTKKCKVKKEAPFAFRITLV 182

Query: 193 QGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMCEDSSG- 251
           QGLNRQIRRMCE  GYEV KL R RIMN++L GIP G+WR L++ E+ E+  + E+SS  
Sbjct: 183 QGLNRQIRRMCEHFGYEVTKLERTRIMNVSLSGIPLGEWRDLTDDELIELFKLIENSSSE 242

Query: 252 TEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQ 310
            +  ++       IKR         +    E K R  P      N + F      KK +
Sbjct: 243 AKPKAKAKPKTQAIKRPV------VKAPQAEDKGRGKP-----GNGKRFTQPGRKKKGR 290