Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., pseudouridine synthase from Enterobacter asburiae PDN3

 Score =  103 bits (256), Expect = 7e-27
 Identities = 85/290 (29%), Positives = 141/290 (48%), Gaps = 23/290 (7%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQD--EVCIDGKPLRSKER 76
           ++L K ++  G+ SRRE + +IE GRV+++G    +G +V      ++ IDG  +  KE 
Sbjct: 3   EKLQKVLARAGHGSRREIEAIIEAGRVSVDGKIATLGDRVEIVPGLKIRIDGHLISVKES 62

Query: 77  PIYI----ALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTN 128
              I    A  KP G  CT   D  G    F    K    R   +GRLD  + GL+  T 
Sbjct: 63  AEQICRVLAYYKPEGELCT-RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD----TVTLPCKVTQETQ 184
           DG++ N+++      E+EY VRV   +    +R +S GV + D      T+     +   
Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDENKLRDLSRGVQLEDGPAAFKTIKFTGGEGIN 181

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVS--- 240
             + + LT+G NR++RR+ EA+G +V +L RVR  +I L  G+P G +  L   + +   
Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDILLPKGLPRGGYTELDLTQTNYLR 241

Query: 241 EILAMCEDSSG--TEEASRVAQSGDTIKRATDAKLFDSREANKESKARRN 288
           E++ +  +++     E  R     + I+RA   K      +++ S +R N
Sbjct: 242 ELVGLTPETTSKVAVEKDRRRMKANQIRRA--VKRHSQVSSSRRSGSRNN 289