Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., pseudouridine synthase from Enterobacter asburiae PDN3

 Score =  107 bits (268), Expect = 2e-28
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGKPLRSKERPI 78
           RL+KFI++    SR  A + I   RVT++G +  +   K+    +V  DG PL  +  P 
Sbjct: 2   RLDKFIAQQLGVSRAIAGREIRASRVTVDGDIVKDTAFKLQPDHQVEYDGNPLTQQHGPR 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGH---HKRIFPIGRLDKPSDGLIFLTNDGDIVNK 135
           Y  LNKP G  C+T+      ++ F+     HK +   GRLD  + GL+ +T+DG   ++
Sbjct: 62  YFMLNKPEGYVCSTDDPDHPTVLYFLDEPVAHK-LHAAGRLDIDTTGLVLMTDDGQWSHR 120

Query: 136 ILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD--TVTLPCKVTQETQYSFRIVLTQ 193
           I    ++ EK Y+V ++ P++ +   Q + GV + +   +T P  +   T    R+ +++
Sbjct: 121 ITSPRHHCEKTYLVTLESPVSDDTAEQFTKGVQLHNEKDLTKPAVLEVITPTEVRLTISE 180

Query: 194 GLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEI 242
           G   Q++RM  A+G  V  L R RI  I LD  +  G++R L+E E++ +
Sbjct: 181 GRYHQVKRMFAAVGNRVVGLHRERIGAIELDPDLAPGEYRPLTEEEIASV 230