Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Escherichia coli ECRC62

 Score =  110 bits (274), Expect = 6e-29
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 23/290 (7%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKV--TEQDEVCIDGKPLRSKER 76
           ++L K ++  G+ SRRE + +IE GRV+++G   ++G +V  T   ++ IDG  +  +E 
Sbjct: 3   EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62

Query: 77  PIYI----ALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTN 128
              I    A  KP G  CT   D  G    F    K    R   +GRLD  + GL+  T 
Sbjct: 63  AEQICRVLAYYKPEGELCT-RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD----TVTLPCKVTQETQ 184
           DG++ N+++      E+EY VRV   +    +R +S GV + D      T+     +   
Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEIL 243
             + + LT+G NR++RR+ EA+G +V +L RVR  +I L  G+P G W  L  A+ + + 
Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241

Query: 244 AMCE-----DSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRN 288
            + E      S    E  R     + I+RA   K        + S  R N
Sbjct: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRA--VKRHSQVSGGRRSGGRNN 289