Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Escherichia coli ECRC62

 Score =  277 bits (708), Expect = 3e-79
 Identities = 142/233 (60%), Positives = 172/233 (73%), Gaps = 2/233 (0%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERP-- 77
           RLNK+ISE+G CSRREAD+ IEQG V LNG +  +G +V   D V ++G+ +  +E    
Sbjct: 8   RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67

Query: 78  IYIALNKPTGITCTTERDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDGDIVNKIL 137
           + IALNKP GI  TTE     NIVDF+ H KR+FPIGRLDK S GLIFLTN GD+VNKIL
Sbjct: 68  VLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127

Query: 138 RAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIVLTQGLNR 197
           RAGN+HEKEY+V VDKPIT EFIR M +GV IL TVT  CKV +E  + FRI L QGLNR
Sbjct: 128 RAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNR 187

Query: 198 QIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMCEDSS 250
           QIRRMCE  GYEV KL R RIMN++L GIP G+WR L++ E+ ++  + E+SS
Sbjct: 188 QIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240