Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Dickeya dianthicola ME23

 Score =  107 bits (268), Expect = 3e-28
 Identities = 82/293 (27%), Positives = 148/293 (50%), Gaps = 23/293 (7%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKV--TEQDEVCIDGK--PLRSK 74
           ++L K ++  G+ SRRE + +IE GR++++G    +G +V  T   ++ +DG    +R  
Sbjct: 3   EKLQKVLARAGHGSRREIESMIEAGRISVDGKIATLGDRVEVTRATKIRLDGHVVSVRET 62

Query: 75  ERPIYIALN--KPTGITCT-TERDVPGNIVDFIGHHK--RIFPIGRLDKPSDGLIFLTND 129
           E  +   L   KP G  CT ++ +    + D +   +  R   +GRLD  + GL+  T D
Sbjct: 63  EETVCRVLMYYKPEGELCTRSDPEGRPTVFDRLPRIQGYRWVAVGRLDVNTSGLLLFTTD 122

Query: 130 GDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTV----TLPCKVTQETQY 185
           G++ N+++      E+EY VRV   +  + IRQ+S GV + D      ++  +  +    
Sbjct: 123 GELANRLMHPSREVEREYAVRVFGEVGDDKIRQLSKGVQLEDGPAAFRSIRYQGGEGLNQ 182

Query: 186 SFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEILA 244
            + + LT+G NR++RR+ EA+G +V +L RVR  +I L  G+P G W  +   +V+ +  
Sbjct: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIQLPKGVPRGGWMEMGLTDVNYLRE 242

Query: 245 MCEDSSGT-------EEASRVA--QSGDTIKRATDAKLFDSREANKESKARRN 288
           + + +  T        E  RV   Q    +KR +   + +   + + S  +RN
Sbjct: 243 LVQLTPETVSKLPVERERRRVKANQIRRAVKRHSQVGVSNRPASGRRSAPKRN 295