Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., 16S rRNA pseudouridine(516) synthase RsuA from Dickeya dianthicola ME23

 Score =  109 bits (272), Expect = 8e-29
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGS-KVTEQDEVCIDGKPLRSKERPI 78
           RL+KF+S+    SR    + +   RVT+NG   + G+ K+    EV  D   L  +  P 
Sbjct: 2   RLDKFLSQQLGISRSLIVRELRAQRVTVNGEVVKSGAFKLLPDHEVTFDDNVLEQQNGPR 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGHH--KRIFPIGRLDKPSDGLIFLTNDGDIVNKI 136
           Y  LNKP G  C+T+      I+ FI      ++   GRLD  + GL+ LT+DG   ++I
Sbjct: 62  YFMLNKPQGYVCSTDDPDHPTILYFIDEPVANKLHAAGRLDIDTSGLVLLTDDGQWSHRI 121

Query: 137 LRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNI--LDTVTLPCKVTQETQYSFRIVLTQG 194
               ++ EK Y+V +++P+ P+      +GV +     +T P  +   ++Y  R+ +++G
Sbjct: 122 TSPKHHCEKTYLVTLEQPLAPDTADNFQAGVQLHGEKDLTRPATLEPVSEYQVRLTISEG 181

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITL-DGIPNGKWRYLSEAEVSEI 242
              Q++RM  A+G  V  L R RI  ITL D +  G++R L+  EV+ I
Sbjct: 182 RYHQVKRMFAAVGNHVVALHRERIGAITLDDALEPGEYRPLTPEEVAGI 230