Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., pseudouridine synthase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  300 bits (767), Expect = 3e-86
 Identities = 155/237 (65%), Positives = 189/237 (79%), Gaps = 3/237 (1%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRS-KERPI 78
           R+NK++SE GYCSRR ADKL+E+G +T+NG  PE+G+KV+  D+V ++GK +   KE  I
Sbjct: 7   RINKYLSEIGYCSRRAADKLLEEGCITINGKVPELGTKVSPGDDVRVNGKLVSPPKEDFI 66

Query: 79  YIALNKPTGITCTTE-RDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDGDIVNKIL 137
           YIA +KP GI CTT+ +    NI+D+I H KRIFPIGRLDKPS+GLIFLTNDGDIVNKIL
Sbjct: 67  YIAFHKPVGIVCTTDTKREKDNIIDYINHPKRIFPIGRLDKPSEGLIFLTNDGDIVNKIL 126

Query: 138 RAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIVLTQGLNR 197
           RA NNHEKEYVV VDKPITP FI +M++GV ILDTVT  CKV Q  +  F+IVLTQGLNR
Sbjct: 127 RARNNHEKEYVVTVDKPITPNFIHKMANGVPILDTVTRKCKVEQIGKRKFKIVLTQGLNR 186

Query: 198 QIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILAMCEDSSGTEE 254
           QIRRMC+ L YEV KL+R+RIMN+ LD +P GKWRYL+ AE++EI A+  DSS T E
Sbjct: 187 QIRRMCQYLDYEVTKLKRIRIMNVQLD-MPVGKWRYLTPAELAEINALVADSSKTFE 242