Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., pseudouridine synthase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  145 bits (366), Expect = 2e-39
 Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 9/241 (3%)

Query: 13  MSQPT--EKRLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCIDGK 69
           +++PT  E RLNK+I+  G CSRR+ADKLIE+G V +NG +  E+G +V   D+V   GK
Sbjct: 140 LAKPTSSEIRLNKYIANAGICSRRDADKLIEKGEVKVNGEVITELGYRVLLTDKVVYKGK 199

Query: 70  PLRSKERPIYIALNKPTGITCTTERDVPGNIVDFI---GHHKRIFPIGRLDKPSDGLIFL 126
            L + E+P+Y+ LNKP     TT+  +    V  +      +RIFP+GRLD+ + GL+  
Sbjct: 200 -LINPEKPVYVLLNKPKDFITTTDDPMNRKTVMHLVSSACEERIFPVGRLDRNTTGLLLF 258

Query: 127 TNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTL--PCKVTQETQ 184
           TNDG++  K+        K Y V +D PIT     +++ G+ + D +      ++  + +
Sbjct: 259 TNDGELAAKLSHPAEKVRKIYQVTLDSPITKTHFEEIAEGLTLEDGLVNVDDIQILSKDR 318

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILA 244
               + +  G NR +RR+   LGYEV  L RV    +T   +  GKWR+L+E EV  +  
Sbjct: 319 TILGLEIHVGKNRIVRRIFAHLGYEVVALDRVTYAGLTKKDLSRGKWRFLTEKEVINLKF 378

Query: 245 M 245
           M
Sbjct: 379 M 379