Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., ribosomal large subunit pseudouridine synthase F from Caulobacter crescentus NA1000 Δfur

 Score =  113 bits (283), Expect = 5e-30
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 22/245 (8%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVCI-DGKPLRSKER 76
           +R+NK+++++G CSRREA++LI  G V+++G +  +VG K+     + + D    +    
Sbjct: 13  QRVNKWLAQSGVCSRREAEQLISDGLVSIDGEVVEDVGRKIQPGQTLTLADRATAKLDAV 72

Query: 77  PIYIALNKPTGITCTTERDVPGNI-----------------VDFIGHHKRIFPIGRLDKP 119
           P Y+ ++KP G+   + +  PG +                 V        I PIGRLDK 
Sbjct: 73  PTYL-VHKPRGVV--SSQPDPGQVPAARLLTRANLWGDARGVAIPQSGDLIPPIGRLDKD 129

Query: 120 SDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKV 179
           S GL+ L+ DG +   ++   +  EKEY V V   +T E +  +  G+ +      P +V
Sbjct: 130 SRGLLLLSQDGVVAKAVIGPQSELEKEYRVAVMGELTEEKLELLRFGLELDGRELRPAEV 189

Query: 180 TQETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEV 239
              +      VL +G NRQIRRMCE +  +V  L RVR+  + L  +P G WR L+ AE 
Sbjct: 190 EVISDQRLSFVLREGRNRQIRRMCELVDLKVVDLFRVRVGPLDLGDMPEGHWRLLTAAER 249

Query: 240 SEILA 244
           + ++A
Sbjct: 250 AALVA 254