Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Ribosomal large subunit pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score =  107 bits (268), Expect = 3e-28
 Identities = 84/287 (29%), Positives = 143/287 (49%), Gaps = 24/287 (8%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPL-RSKERP 77
           ++L K ++  G  SRRE ++ IE+GRV+++G +  +G +V    ++ +DG  L R  E+P
Sbjct: 3   EKLQKVLANQGLGSRREMERWIEEGRVSVDGTKATLGDRVDHTAQIRVDGHLLSRQTEQP 62

Query: 78  IYIAL--NKPTGITCTTE----RDVPGNIVDFIGHHKRIFPIGRLDKPSDGLIFLTNDGD 131
           I   L  NKP G  C+      RD   + +  I    R   +GRLD  + GL+  TNDG+
Sbjct: 63  ICRVLMYNKPEGELCSRHDPEGRDTVFDRLPAI-RLGRWITVGRLDMNTSGLLLFTNDGE 121

Query: 132 IVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILD------TVT---LPCKVTQE 182
           + N+++      E+EY VRV   +T + +  +  GV + D      T++    P     E
Sbjct: 122 LANRLMHPKCEVEREYAVRVFGEVTGKTLHTLQKGVELEDGEAKFLTISGAPTPQHAEDE 181

Query: 183 TQYS-FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVS 240
           +    + + L +G NR++RR+ E+ G +V +L RV+   I L   +P G W  L   +V+
Sbjct: 182 SMNRWYNVTLKEGRNREVRRLWESQGVQVSRLIRVKYGPIELQKRLPQGAWVELGLEDVN 241

Query: 241 EILAMCEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARR 287
            + +  +    T+    V Q      +   A+L   R + K+ K R+
Sbjct: 242 ALRSHVQLPDETQTMVNVRQG-----KLDHARLSRMRRSVKKHKVRK 283