Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ribosomal large subunit pseudouridine synthase B from Agrobacterium fabrum C58

 Score = 96.7 bits (239), Expect = 2e-24
 Identities = 88/329 (26%), Positives = 148/329 (44%), Gaps = 34/329 (10%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGL---QPEVGSKVTEQDEVCIDGKPLRSKE 75
           +R++K ++  G  SRR+ +++I +GRV+LNG+    P V +  T  D++ +DG P+R  E
Sbjct: 57  ERISKIMARAGVASRRDVERMIMEGRVSLNGVLLDTPVVNA--TLSDKIEVDGMPIRGAE 114

Query: 76  RPIYIALNKPTGITCTTERDVPGNIVDFI---GHHKRIFPIGRLDKPSDGLIFLTNDGDI 132
           R      +KP G+  TT  D  G    F    G   R+  IGRLD  ++GL+ LTNDG +
Sbjct: 115 RTRLWLYHKPAGLV-TTNSDPEGRPTVFDNLPGELPRVLSIGRLDINTEGLLLLTNDGGL 173

Query: 133 VNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYSFRIVLT 192
              +        + Y VR    +    + ++  G+ +   +      T +      + +T
Sbjct: 174 SRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGHNVWIT 233

Query: 193 QGL----NRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILA-MCE 247
            GL    NR+I+ +  ALG EV +L R+      L  +P GK        V E+   M  
Sbjct: 234 MGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGK--------VLEVRGRMLR 285

Query: 248 DSSGTEEASRVAQSGDTIKRATDAKLFD-SREANKESKARRNPKTYHGKNAQE----FRH 302
           D  G      + ++G       DA +++ S +  +E+ A+R    +   +A E    F  
Sbjct: 286 DQLGPR---LIEEAGANF----DAPIYNTSVDDEEEAPAKRAKSEWAKSDAPEGKPRFEK 338

Query: 303 APNSKKAQRRPSSPSSNTASGSKPTPRTG 331
           A    + +R  +    +T    KP  + G
Sbjct: 339 AAGKPEDRREKALGRLDTKRSDKPAGKFG 367