Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., Ribosomal large subunit pseudouridine synthase B from Acinetobacter radioresistens SK82

 Score =  108 bits (271), Expect = 1e-28
 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 22/246 (8%)

Query: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLR----SK 74
           ++L K ++  G  SRR  +++I  GRV++NG   +VG ++   DE+ IDG+ ++     +
Sbjct: 3   EKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRVAQVGERIEPGDELRIDGRKVQFQIEDE 62

Query: 75  ERPIYIALNKPTGITCTTERDVPGNIVDFIGH-----HKRIFPIGRLDKPSDGLIFLTND 129
            R   +   KP G  C+  R+ P +      H     + R   +GRLD  S GL+  TND
Sbjct: 63  IRRRVLIYYKPEGEICS--RNDPESRPTVFDHLPTIANDRWVMVGRLDINSTGLLLFTND 120

Query: 130 GDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVTQETQYS--- 186
           G++ N+++   N  E+EY VRV   +TP+  + M +GV + D    P K    ++     
Sbjct: 121 GELANRLMHPSNEIEREYAVRVMGEVTPQIRQNMLNGVVLDDG---PAKFESFSEIGGDG 177

Query: 187 ----FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSE 241
               +++V+ +G NR++RR+ E+ G +V +L R R   + L   +  G+W  L +A++  
Sbjct: 178 INRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWIELDKADIDN 237

Query: 242 ILAMCE 247
           +    E
Sbjct: 238 LTKSVE 243