Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., Ribosomal small subunit pseudouridine synthase A from Acinetobacter radioresistens SK82

 Score =  102 bits (253), Expect = 1e-26
 Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 21  LNKFISETGYCSRREADKLIEQGRVTLNG-LQPEVGSKVTEQDEVC-IDGKPLRSKERPI 78
           L K +   G+ SR+   +LI+ G +++N  +  +  +K   ++    + G+    +E+ +
Sbjct: 3   LEKILQSQGFGSRKYCQQLIKSGAISINHEICADTKAKFDLKNFTFEVHGEEFEYREK-V 61

Query: 79  YIALNKPTGITCTTERDVPGNIVDFIGH---HKRIFPIGRLDKPSDGLIFLTNDGDIVNK 135
           YIALNKP G  C+ +     ++ D       ++ I  +GRLD+ + GL+ LT+DG  +  
Sbjct: 62  YIALNKPQGYECSHQAQYHFSVFDLFDPALLNRGIQCVGRLDQDTTGLLLLTDDGQFLQA 121

Query: 136 ILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNIL-DTVTLPCKVTQETQYSFRIVLTQG 194
           +     +  K Y +    PITPE IR +  GV +  D +     + Q + +   + + QG
Sbjct: 122 LTHPRKHVAKVYDLITVDPITPEQIRLLEQGVELRNDGIFKASNIKQTSSHQLSLAIHQG 181

Query: 195 LNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEV 239
           +  Q++RM  A+G +V KL R +I  + L  +  G+W YL + E+
Sbjct: 182 VYHQVKRMLAAVGNKVEKLHRSKIGELELPMLAEGEWTYLDQTEI 226