Pairwise Alignments

Query, 192 a.a., DNA endonuclease SmrA from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., DNA mismatch repair protein MutS from Pseudomonas simiae WCS417

 Score = 98.6 bits (244), Expect = 6e-26
 Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 4/179 (2%)

Query: 1   MSQEDLELFQQMMGDVKTITHDTVELKKAHQVTEAQLAKREAAVSLADHDP--EALSIDH 58
           M  +D  LF+  +  VK I HD  +  K  +   AQ+AK   A ++       + LS   
Sbjct: 1   MQDDDFSLFKNELRGVKPIKHDRADTGKP-KADRAQIAKLRQAATVRTEATTVDGLSDQF 59

Query: 59  APMLKPDDMLEFKRDGVQDGVYRKLRLGKYPIQARLDLHRKTLKEARSEVIQFIRQCMAM 118
              + P+D L + RDGVQ+   RKL+  + P +  LDLH  ++++AR  +  F+ +    
Sbjct: 60  VIDVGPEDELMWARDGVQESQMRKLKAAQIPFEGSLDLHGMSVEKARETLWAFLAEATRF 119

Query: 119 DIRTLLIVHGRGER-STPPALMKSFVSHWLTQISEVQCAHSAQRLHGGTGAVYVLLRKS 176
           +IR + + HG+  R      ++KS V+ WL Q ++V    S Q  HGG GAVYV+LR++
Sbjct: 120 EIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHAQVLGFTSCQARHGGAGAVYVMLRRT 178