Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., porin from Pseudomonas simiae WCS417

 Score =  110 bits (275), Expect = 5e-29
 Identities = 93/280 (33%), Positives = 128/280 (45%), Gaps = 37/280 (13%)

Query: 52  GAFLGYQANKWLSLEAGYDYLGKFTAA-GLNDEKVQAVT--LAPKLSIPLTEGIALYGKV 108
           GA +GY     LSL   YD      +  G  ++K++  T  L  +         +L   V
Sbjct: 54  GARIGYFLTDDLSLNLSYDKTNHTRSNDGTGNQKIKGDTGSLVAQYHFGQAGVDSLRPYV 113

Query: 109 GGAYVDYGSKDDYSYLGAAGLEFNTNHNVTMRLEYQNLTDINNDIVRARAE--------- 159
            G +  + S+ +    G +G +  T   V   ++Y      NN   RA  E         
Sbjct: 114 EGGF-GHQSRTNVQADGHSGRDQTTFATVGTGVKYYFT---NNLYARAGVEADYGLDNGK 169

Query: 160 ---TATLGIAYKFGGSE-------EPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDS 209
              +A +G+   FGG+         PAP  E  P   APVA  V +V +   F F     
Sbjct: 170 WDYSALVGLGVNFGGNAGAVAPAPTPAPAPEPTPEPEAPVAQVV-RVELDVKFDFD---- 224

Query: 210 STFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQAVA 269
                  + +KP +   +  +  ++ QYP   VEV GHTDS G +AYNQKLS+RRA AV 
Sbjct: 225 ------KSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSVGPDAYNQKLSQRRADAVK 278

Query: 270 KALEAQGIDASRISAKGLGESSPIASNATAEGREKNRRVE 309
           + L   G+  SRI+A G GES P+A NAT  GR  NRRVE
Sbjct: 279 QVLVKDGVAPSRITAVGYGESRPVADNATEAGRAVNRRVE 318