Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., Outer membrane porin F from Pseudomonas putida KT2440

 Score =  103 bits (256), Expect = 8e-27
 Identities = 89/299 (29%), Positives = 133/299 (44%), Gaps = 44/299 (14%)

Query: 45  EDDDQVVGAFLGYQANKWLSLEAGYDYLGKFTAAGLNDEKVQAVTLAPKLSIPLT---EG 101
           ++D  + G  +GY     + L  GYD +    A G + + ++    A           + 
Sbjct: 48  KNDGNLFGGSIGYFLTDDVELRLGYDEV--HNARGEDGKNIKGSNTALDAVYHFNNPYDA 105

Query: 102 IALYGKVGGAYVDYGSKDDYSYLGAAGLEFNTNHNVTMRLEYQNLTDI---------NND 152
           I  Y   G ++   G        G  G + +T  NV    ++  +TD+           +
Sbjct: 106 IRPYVSAGFSHQSLGQT------GRGGRDHSTFANVGAGAKWY-ITDMFYARAGVEAQYN 158

Query: 153 IVRARAETA-TLGIAYKFGGSEE-----PAPV---------------VEQRPAEPAPVAA 191
           I +   E A ++G+   FGGS +     PAPV               V++ P  PA V  
Sbjct: 159 IDQGDTEWAPSVGVGLNFGGSPKQAEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTV 218

Query: 192 PVEKVAVTKTFTFQHLDSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST 251
             +            LD   F    + +KP +   +  +  ++ QYPQ    V GHTDS 
Sbjct: 219 DADGCPAVAEVVRVELDVK-FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV 277

Query: 252 GSEAYNQKLSERRAQAVAKALEAQ-GIDASRISAKGLGESSPIASNATAEGREKNRRVE 309
           G +AYNQKLSERRA AV + L  Q G+++SR+ + G GE+ P+A NAT EGR  NRRVE
Sbjct: 278 GPDAYNQKLSERRANAVKQVLTQQYGVESSRVDSVGYGETRPVADNATEEGRAVNRRVE 336