Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., porin OmpA from Serratia liquefaciens MT49

 Score =  153 bits (386), Expect = 7e-42
 Identities = 118/356 (33%), Positives = 177/356 (49%), Gaps = 49/356 (13%)

Query: 1   MKKLAAIISATLL-FASSAAVAEV----YVGGKVGKSWLDDACLAGQSCED--------- 46
           MKK A  ++  L  FA+ A  A      Y G K+G S   D    G   ++         
Sbjct: 1   MKKTAIALAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFYGNGYQNGIGNGPNHK 60

Query: 47  DDQVVGAFLGYQANKWLSLEAGYDYLGKFTAAGLNDE---KVQAVTLAPKLSIPLTEGIA 103
           D    GAFLGYQAN++L  E GYD+LG+    G  +    K Q V LA KLS P+ + + 
Sbjct: 61  DQLGAGAFLGYQANQYLGFELGYDWLGRMPYKGSVNNGAFKAQGVQLAAKLSYPIIDDLD 120

Query: 104 LYGKVGGAYVDYGSKDDY-------------SYLGAAGLEFNTNHNVTMRLEYQNLTDIN 150
           +Y ++GG      SK +Y             S L A G+E+    N   RL+YQ +++I 
Sbjct: 121 IYTRLGGMVWRADSKANYGNGTRLSDHDTGVSPLAAVGVEYALTKNWATRLDYQFVSNIG 180

Query: 151 N-DIVRARAETA--TLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHL 207
           +   V AR +    +LG++Y+FG  +  AP        PAP  APV +   TK FT +  
Sbjct: 181 DAGTVGARPDNTMLSLGVSYRFGQDDVVAPA-------PAPAPAPVVE---TKRFTLK-- 228

Query: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYP--QAKVEVVGHTDSTGSEAYNQKLSERRA 265
               F    + LK    Q LD++   L+        V V+G+TD+ GS+ YNQKLSE+RA
Sbjct: 229 SDVLFNFNKSTLKAEGQQALDQLYTQLSSMDPKDGSVVVLGYTDAVGSDQYNQKLSEKRA 288

Query: 266 QAVAKALEAQGIDASRISAKGLGESSPIASNATA--EGREKNRRVELVIPEFQYQV 319
           Q+V   L ++GI + +ISA+G+GE+  +  N      GR    +++ + P+ + ++
Sbjct: 289 QSVVDYLVSKGIPSDKISARGMGEADSVTGNTCGYKAGRATKAQIDCLAPDRRVEI 344