Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., Outer membrane protein A precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  145 bits (366), Expect = 1e-39
 Identities = 114/347 (32%), Positives = 172/347 (49%), Gaps = 39/347 (11%)

Query: 1   MKKLAAIISATLL-FASSAAVAEV----YVGGKVGKS-WLDDACLAGQSCEDDDQV-VGA 53
           MKK A  I+  L  FA+ A  A      Y G K+G S + D   +       ++Q+  GA
Sbjct: 9   MKKTAIAIAVALAGFATVAQAAPKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGAGA 68

Query: 54  FLGYQANKWLSLEAGYDYLGKFTAAGLNDE---KVQAVTLAPKLSIPLTEGIALYGKVGG 110
           F GYQ N ++  E GYD+LG+    G N     K Q V L  KL  P+T+ + +Y ++GG
Sbjct: 69  FGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTAKLGYPITDDLDVYTRLGG 128

Query: 111 AYVDYGSKDDY-------------SYLGAAGLEFNTNHNVTMRLEYQ---NLTDINNDIV 154
                 +K +              S + A G+E+     +  RLEYQ   N+ D N    
Sbjct: 129 MVWRADTKSNVPGGPSTKDHDTGVSPVFAGGIEYAITPEIATRLEYQWTNNIGDANTIGT 188

Query: 155 RARAETATLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTFAT 214
           R      ++G++Y+FG  +E APVV      PAP  AP  +   TK FT +      F  
Sbjct: 189 RPDNGLLSVGVSYRFG-QQEAAPVVA-----PAPAPAPEVQ---TKHFTLK--SDVLFNF 237

Query: 215 ASAELKPATVQKLDKIVGYLNQYP--QAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKAL 272
             + LKP   Q LD++   L+        V V+G TD  GS+AYNQ LSE+RAQ+V   L
Sbjct: 238 NKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYL 297

Query: 273 EAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELVIPEFQYQV 319
            ++GI + +ISA+G+GES+P+  N     + +   ++ + P+ + ++
Sbjct: 298 ISKGIPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEI 344