Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., outer membrane protein A (3a;II*;G;d) (NCBI) from Escherichia coli BW25113

 Score =  149 bits (375), Expect = 1e-40
 Identities = 116/343 (33%), Positives = 169/343 (49%), Gaps = 35/343 (10%)

Query: 1   MKKLAAIISATLL-FASSAAVAEV----YVGGKVGKSWLDDACLAGQS--CEDDDQVVGA 53
           MKK A  I+  L  FA+ A  A      Y G K+G S   D      +    ++    GA
Sbjct: 1   MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA 60

Query: 54  FLGYQANKWLSLEAGYDYLGKFTAAGLNDE---KVQAVTLAPKLSIPLTEGIALYGKVGG 110
           F GYQ N ++  E GYD+LG+    G  +    K Q V L  KL  P+T+ + +Y ++GG
Sbjct: 61  FGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGG 120

Query: 111 AYVD-------YGSKDD--YSYLGAAGLEFNTNHNVTMRLEYQ---NLTDINNDIVRARA 158
                      YG   D   S + A G+E+     +  RLEYQ   N+ D +    R   
Sbjct: 121 MVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDN 180

Query: 159 ETATLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTFATASAE 218
              +LG++Y+FG  E  APVV      PAP  AP  +   TK FT +      F    A 
Sbjct: 181 GMLSLGVSYRFGQGEA-APVVA-----PAPAPAPEVQ---TKHFTLK--SDVLFNFNKAT 229

Query: 219 LKPATVQKLDKIVGYLNQYP--QAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKALEAQG 276
           LKP     LD++   L+        V V+G+TD  GS+AYNQ LSERRAQ+V   L ++G
Sbjct: 230 LKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKG 289

Query: 277 IDASRISAKGLGESSPIASNATAEGREKNRRVELVIPEFQYQV 319
           I A +ISA+G+GES+P+  N     +++   ++ + P+ + ++
Sbjct: 290 IPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332