Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., porin OmpA from Escherichia coli ECRC62

 Score =  148 bits (374), Expect = 2e-40
 Identities = 121/347 (34%), Positives = 175/347 (50%), Gaps = 39/347 (11%)

Query: 1   MKKLAAIISATLL-FASSAAVAEV----YVGGKVGKS-WLDDACLAGQSCEDDDQV-VGA 53
           MKK A  I+  L  FA+ A  A      Y G K+G S + D   +       ++Q+  GA
Sbjct: 1   MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFIPNNGPTHENQLGAGA 60

Query: 54  FLGYQANKWLSLEAGYDYLGKFTAAGLNDE---KVQAVTLAPKLSIPLTEGIALYGKVGG 110
           F GYQ N ++  E GYD+LG+    G N     K Q V L  KL  P+T+ + +Y ++GG
Sbjct: 61  FGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTAKLGYPITDDLDVYTRLGG 120

Query: 111 --------AYVDYGS--KDD---YSYLGAAGLEFNTNHNVTMRLEYQ---NLTDINNDIV 154
                   A V  G+  KD     S + A G+E+     +  RLEYQ   N+ D N    
Sbjct: 121 MVWRADTKANVPGGASFKDHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDANTIGT 180

Query: 155 RARAETATLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTFAT 214
           R      +LG++Y+FG  E  APVV      PAP  AP  +   TK FT +      F  
Sbjct: 181 RPDNGLLSLGVSYRFGQGEA-APVVA-----PAPAPAPEVQ---TKHFTLK--SDVLFNF 229

Query: 215 ASAELKPATVQKLDKIVGYLNQYP--QAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKAL 272
             A LKP     LD++   L+        V V+G+TD  GS+AYNQ LSERRAQ+V   L
Sbjct: 230 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 289

Query: 273 EAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELVIPEFQYQV 319
            ++GI A +ISA+G+GES+P+  N     +++   ++ + P+ + ++
Sbjct: 290 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 336