Pairwise Alignments

Query, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., porin OmpA from Dickeya dianthicola ME23

 Score =  152 bits (383), Expect = 2e-41
 Identities = 116/348 (33%), Positives = 173/348 (49%), Gaps = 37/348 (10%)

Query: 1   MKKLAAIISATLLFASSAAVAEV-------YVGGKVGKSWLDDACLAGQ-----SCEDDD 48
           MKK A  I+  L  A  A VA+        Y GGK+G S   D  L G      +     
Sbjct: 1   MKKTAIAIAVAL--AGFATVAQAAPNDNTWYAGGKLGWSQYHDTGLTGNGYNVTNAAQSQ 58

Query: 49  QVVGAFLGYQANKWLSLEAGYDYLGKFTAAGLNDE--KVQAVTLAPKLSIPLTEGIALYG 106
              GAF GYQAN +L  E GYD+LG+    G N    K Q V LA KLS P+ + + +Y 
Sbjct: 59  LGAGAFGGYQANPYLGFEMGYDWLGRMKYNGGNQGSFKAQGVQLAAKLSYPIVDDLDIYT 118

Query: 107 KVGGAYVDYGSKDD---------YSYLGAAGLEFNTNHNVTMRLEYQNLTDINN-DIVRA 156
           ++GG      S D+          S L A G+E+    N   RL+YQ + +I +   V  
Sbjct: 119 RLGGFVWRADSHDNSGLNDHDTGVSPLAAVGVEYAITKNWATRLDYQWVNNIGDASTVGG 178

Query: 157 RAETATL--GIAYKFGG-SEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTFA 213
           R +   L  G++Y+FG  +  PAP++   PA P P  APV +   TK FT +      F 
Sbjct: 179 RPDNGLLSVGVSYRFGQETAAPAPIIAAAPA-PTPAPAPVVQ---TKRFTLK--SDVLFN 232

Query: 214 TASAELKPATVQKLDKIVGYLNQYP--QAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKA 271
              A LKP   + LD++   L+        V V+G TD  GS+ YNQ LS +RAQ V   
Sbjct: 233 FNKATLKPEGQRSLDQLYSQLSTLDPKDGSVVVLGFTDRLGSDQYNQTLSTKRAQTVVDY 292

Query: 272 LEAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELVIPEFQYQV 319
           L  +GI +++ISA+G+G+++P++ +     + +   ++ + P+ + ++
Sbjct: 293 LVHKGIPSNKISARGMGKANPVSGSTCVNVKARAALIDCLAPDRRVEI 340