Pairwise Alignments

Query, 377 a.a., flagellar basal-body protein from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  136 bits (342), Expect = 1e-36
 Identities = 90/389 (23%), Positives = 187/389 (48%), Gaps = 15/389 (3%)

Query: 2   KKNILSIISALWMMLQL-----PSAHAAWYEVTGSAAIVSSE-EVARLHALEDALYKAVN 55
           K  +++I++A+  ++ L       A+A WYE TG A + + + E AR  A ++AL +A+ 
Sbjct: 6   KTTLVTILNAVVAVICLFAFLVGQANAVWYEATGQAVVRNGDKETARHAATQEALKQAML 65

Query: 56  FAGADIGSISNLMPLLESDRREYLFANHEVRYILIEERKAINNVMYVRTRIDIYPSATAC 115
           FAGA + S++ L   L  +    + +  EV  + + +     +V+ V  R DI+P    C
Sbjct: 66  FAGASVHSVAKLTNGLLKNEEMTIRSAGEVEQLELVDEVYSGDVITVSIRADIFPRGKVC 125

Query: 116 HVEQYKKTMLIGNIDLASPQQAVMGQIYQVGDDFAQVINRRLEQESRS----FVSVGTTQ 171
             +  +K     +  + +  Q   G I      F Q + + +  ++ +    +++  T +
Sbjct: 126 AAQNDQKHFATTHFRVRNRAQLTQGNIPNFDASFTQQLAQAMRNKTENLDIIYIAPHTAK 185

Query: 172 YDIDPKAPERIKMIAQDAGAQYIMGGMITDLTATIEQKTL----QDDIINRQFAMEISVF 227
           +D      + ++ ++  +  Q+++ GMI DL+ T E+ ++    ++    R FAM I V+
Sbjct: 186 FD-SRYTDQNVRTLSAQSNTQFVLVGMIDDLSVTREEASVFTPWREGTSRRSFAMTIQVY 244

Query: 228 DGKTGNEVMTRTYREVARWPFPKTSQIDTRSARFWASTYGEMMLRVSRNIMLDLESEISC 287
           DG  G  ++T++Y+    W F +   +D  S +FW S YG+ +       + D++   +C
Sbjct: 245 DGINGGLLLTKSYQNQGEWTFDRFEDVDEFSTKFWQSLYGQTVNATIAEAIEDIKEATAC 304

Query: 288 KITLPQIVAKFGTTATMDLGRIHGVKQGDKLSLWHTGAFIDQQGLPRNKVTQSEITLTVS 347
           +    +++   G   ++ LGR +G+ + D+L L+     +D +G    + +       VS
Sbjct: 305 QPMTGRVINVAGDKISVSLGRDNGISEKDELYLYQAKEIVDNRGRKYLQYSLYPGKFVVS 364

Query: 348 RVYEHEAELTVDQPELAYSIQIGDVMHKQ 376
             Y + + +  +   +  +IQ  D + K+
Sbjct: 365 SAYGNSSLVVNEGAGIIANIQEHDFVVKK 393