Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., flagellar basal body rod modification protein FlgD from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 2e-38
 Identities = 75/207 (36%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 28  DETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLN 87
           ++ TG++SL ++ FL LL  QL  Q+P  P  N   +AQ+A F++++GI  +N    +++
Sbjct: 34  NKATGKQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGINTLNDSVNAIS 93

Query: 88  SSMTSNQALQASSLVGRDVLVPGAAGMKKPDGGMAAMVKLPQSIDNLFIRIENEAGQLVR 147
           S+ +S+QALQASSLVGR +++     M      M   V +  +  N+ ++I ++ G +VR
Sbjct: 94  SNFSSSQALQASSLVGRSIIIQTDKAMVDTSKSMTGSVDVTAATGNVSVKITDKDGNVVR 153

Query: 148 TFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKVKASGLLD-GESKEFEVSTYANVNSVLL 206
           T ++GA+S+G     WDGK+  G   P G Y   A+   D G++     S  A V SV L
Sbjct: 154 TIEMGAQSAGTQSFIWDGKNDKGEVAPAGTYTFNATTKNDKGDAVALSTSLPATVTSVTL 213

Query: 207 GKGDGNVLLNLAGFDAPVRLAEVLEVG 233
            K  G +LLNLAG    V+L+++  +G
Sbjct: 214 SKTGGEMLLNLAGGMGSVKLSQIQTIG 240