Pairwise Alignments

Query, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., Flagellar basal-body rod modification protein FlgD from Pseudomonas putida KT2440

 Score =  122 bits (307), Expect = 5e-33
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 5/235 (2%)

Query: 1   MAGVNNVGQSGLSYIDQLKALQEQKKPDETTGQ--KSLKQEDFLSLLTKQLAQQDPFKPV 58
           M   N+    G +Y+  L+  ++  K D +TG    +L ++ FL LL  Q+  Q+P  P 
Sbjct: 1   MTTTNSTTDVGSAYLTSLQ--KQTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQ 58

Query: 59  SNDQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPD 118
            N + +AQ+A F++++ +  +N     + + + S+QALQASSLVGR+V+V     +    
Sbjct: 59  ENGEFVAQLAQFSSLESMQSLNDAVTYIAAGLQSSQALQASSLVGRNVIVQTDKAVVDTS 118

Query: 119 GGMAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKY 178
             M   V L  S  +  + I ++  +LVRT ++G + SG     WDG + +G     G Y
Sbjct: 119 KDMKGSVNLTSSSTSTSVGIYDKDDKLVRTIELGTQKSGSIDFTWDGLNDDGEVAAAGTY 178

Query: 179 KVKASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVG 233
             KA+  +DG++     +  A+V SV +G     + LNLAG  + V L+++  +G
Sbjct: 179 TFKATASIDGKATAMTTNLPASVTSVTMGSNGSEMTLNLAGLGS-VALSKIQSIG 232