Pairwise Alignments

Query, 249 a.a., flagellar basal-body rod protein FlgF from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., Putative proximal rod protein from Alteromonas macleodii MIT1002

 Score =  252 bits (644), Expect = 5e-72
 Identities = 129/247 (52%), Positives = 175/247 (70%), Gaps = 2/247 (0%)

Query: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60
           MD+ L+++ SGA Q++    +RANNLAN  TTGFRA L QARSM AYGEGLP+RVFSMTE
Sbjct: 45  MDKLLYISASGASQDLLGTGIRANNLANAQTTGFRAQLEQARSMPAYGEGLPTRVFSMTE 104

Query: 61  RPGHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNGHP 120
            P +N+  G +I T RDLD+ IQGDGW +V D+ G+E  +R+GN ++ + G+L + +   
Sbjct: 105 SPSNNYESGPMIKTDRDLDVAIQGDGWFAVQDQNGQEAYSRDGNFKLGDDGILTDIHDRV 164

Query: 121 VLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQSLFKDVNG 180
           VLG+ G PI LPVPL+ + I  DGT+S+R  GAPA+ +E V R+KLV  N   + +  +G
Sbjct: 165 VLGDNG-PIFLPVPLDNLNIAADGTLSMRQLGAPANVIEEVGRLKLVSPNYADMERGNDG 223

Query: 181 LFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEMDK 240
           LFR  D +    A+A+VK+++G LEGSNVNA+ EM  +I LQR +E+QVKMM  AEE+D 
Sbjct: 224 LFRMEDGSIA-PANANVKVMSGMLEGSNVNAVDEMVDMISLQRHYELQVKMMKQAEELDT 282

Query: 241 ASDSLLR 247
             + LLR
Sbjct: 283 RGNQLLR 289