Pairwise Alignments

Query, 261 a.a., flagellar L-ring protein from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., flagellar basal body L-ring protein from Pseudomonas simiae WCS417

 Score =  171 bits (434), Expect = 1e-47
 Identities = 90/202 (44%), Positives = 126/202 (62%), Gaps = 7/202 (3%)

Query: 62  PVAGDPAWAPIHPKGKPEHYAAETGSLFNLASSSSMYDDSKPRGVGDIITVTLNESTKAA 121
           P   DP +AP+ P+  P   AA  GS++      ++Y D K   VGDIIT+TLNE T+A+
Sbjct: 24  PKPNDPYYAPVLPR-TPLPAAANNGSIYQAGFEQNLYSDRKAFRVGDIITITLNERTQAS 82

Query: 122 KSADADLNKKNDASMDPLAVGG------KDLTIGDYNFSYALKNDNKFSGSAAANQSNSM 175
           K+A++ + K + A +   ++ G        L  GD + S     D   +G +AA Q NS+
Sbjct: 83  KNANSQVGKTSKAGIGLTSLFGAVPNVNNPLGDGDLSLSAGYSGDRATNGKSAAGQGNSL 142

Query: 176 SGSITVEVIEVLANGNLVIRGEKWLTLNTGDEYIRLSGTIRPDDIDFDNTIASNRISNAR 235
           +GSITV V +VL NG + +RGEKW+TLNTGDE +R++G +R DDI  DNT+ S RI++AR
Sbjct: 143 TGSITVTVADVLPNGIIAVRGEKWMTLNTGDELVRIAGMVRADDISTDNTVPSTRIADAR 202

Query: 236 IQYSGTGTNQDMQEPGFLARFF 257
           I YSGTG   D  +PG+  RFF
Sbjct: 203 ITYSGTGAFADASQPGWFDRFF 224