Pairwise Alignments

Query, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., flagellar hook protein FlgK from Pseudomonas simiae WCS417

 Score =  207 bits (526), Expect = 2e-57
 Identities = 187/694 (26%), Positives = 316/694 (45%), Gaps = 95/694 (13%)

Query: 5   LLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVENV 64
           LL++G   +  +Q  L+   +NI+N NT GYSRQ   Q  +A   YGG   G G  + +V
Sbjct: 3   LLSIGMSGLNASQGALSVLSNNIANANTSGYSRQQTTQSASASNPYGGVFIGSGTTLADV 62

Query: 65  RRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVAS---KKIPEN-------LNE 114
           RR +++F          D A++  T  N D  +K  SS AS   K + +        L+ 
Sbjct: 63  RRVYNEF---------LDAAYQNSTALNND--AKAYSSQASAIDKTLSDKTTGMSSVLSA 111

Query: 115 WFDSVKSLADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQL 174
           +F +V++ A +P+D+ AR+V+L  ++ +S   N     +  QK+  N  L    +++NQL
Sbjct: 112 FFAAVQTSAANPSDVSARQVLLTSAQTLSNRFNSISTQLNQQKESINGQLKTMSDQVNQL 171

Query: 175 ALEIRDLQRLMMRVPGPHN----DLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNG 230
              I  L + + +  G  N    +L+D   + V  L++   VT  + K+G  F++  G G
Sbjct: 172 TSSIASLNKQITQAQGSSNSAPANLLDARNEAVRSLNELVGVTAVE-KNGV-FSVSTGTG 229

Query: 231 HTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPY 289
            +LV G +++ +  +    D  Q+ + +  G          + GG +  +L  R + +  
Sbjct: 230 QSLVLGDQSNSISAVPSSSDPSQYTIQLNAGGGTSVDMGNVLSGGSIGGLLRYRSDVLMP 289

Query: 290 LMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVV---TNSNSKAD 346
            ++++GR+A+  +  +N+   QG+DL G+ GS+LF D+N       R V    NS    +
Sbjct: 290 AINDLGRIAIVTADTINSQLGQGVDLNGDFGSSLFKDINSAAAIAQRSVGAAGNSAGSGN 349

Query: 347 MAVFIEDVSQLKGGEYSMQY-NGSEFVVTLPSGQQ--------TVLPVVKGNVYVDGLRV 397
           + V I D S+L   +Y + + +G+ + V    G+         T  PV+ G      L +
Sbjct: 350 LNVTISDTSKLTPYDYKVTFTSGNNYTVMRSDGKSMGAFDTTTTPPPVIDGFT----LAL 405

Query: 398 EVRNPPQVGERILVRPTRNGAAAIRLATEDATKIA---------AQSFEASTTFA----- 443
           + + P   G+   V PT NGA  I    +DA KIA         +++ + + TF      
Sbjct: 406 DGKGPMAAGDSFKVSPTANGATNIGTDLKDANKIAFAGPLLGEGSKTNQGTGTFTPPTLT 465

Query: 444 -----QGKAKFKILQAGDVREFEVIV---SPTGD---QFAVTDTKGNILLQPQPYP-PTG 491
                 G A    L+ G      V +    P  D    + V D +GN +      P  T 
Sbjct: 466 VPIDIHGGANTAQLRTGIEHSMPVKMVFGKPAADGTQAYTVNDAQGNPIGTGSIIPGQTN 525

Query: 492 PVTV---------------LGTTFELTEGALPND----KFTANLVPSEGDNGNLRKMINI 532
            +T+                   F+   G  P D     F+ N    + DN N + ++++
Sbjct: 526 KITIDVPMRDANGALVVPAKSFKFDTAVGGAPADGDSTTFSFN-ASGKSDNRNAQALLDL 584

Query: 533 QTAKRM-----NDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISGV 587
           QT   +     +    +++     L + VG K A+    T       +A Q    S+S V
Sbjct: 585 QTKATVGLADGSGGGVSLVAANSRLVSTVGAKAASGITDTTATGALLKANQDARNSVSQV 644

Query: 588 NLDEEAANMMKFQQAYMASSRIIQASNDTFNTIL 621
           NLDEEA +M+KFQQ Y ASS+II+A+ +TF+T++
Sbjct: 645 NLDEEAGDMIKFQQYYTASSQIIKAAQETFSTLI 678