Pairwise Alignments

Query, 397 a.a., flagellar hook-associated protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., flagellar hook-filament junction protein from Escherichia coli BL21

 Score = 87.0 bits (214), Expect = 7e-22
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 3/185 (1%)

Query: 4   RISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQ 63
           R S+   YQ     I   +++      Q+++GK++++ SD+P+A      + Q + Q  Q
Sbjct: 2   RFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQ 61

Query: 64  YLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMANNF 123
           Y  A      ++  +E ++S       +A+  ++   NG+LS +DR + A  +Q + +  
Sbjct: 62  YTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQL 121

Query: 124 INLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNPGSK 183
           +NLAN  D +G YIFAG K +  PF   ++ N  Y G     K ++  S  +   + G K
Sbjct: 122 LNLANTTDGNGRYIFAGYKTETAPF---SEANGDYVGGTESIKQQVDASRSMVIGHTGDK 178

Query: 184 VFMEI 188
           +F  I
Sbjct: 179 IFDSI 183



 Score = 34.3 bits (77), Expect = 5e-06
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 284 FSVFDTFRDAIR--YAEGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQ 341
           F++ D+   A++   A+      +  A L +       +  ++   R ++G +L+ L+  
Sbjct: 201 FAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 342 EEQHEDFKISLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLF 394
           +    D  +   +  S   D+D+   +  +     AL+AS KAF   + L+LF
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLF 313