Pairwise Alignments

Query, 379 a.a., flagellin A from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., branched-chain alpha-keto acid dehydrogenase subunit E2 from Pseudomonas simiae WCS417

 Score =  193 bits (491), Expect = 7e-54
 Identities = 130/338 (38%), Positives = 180/338 (53%), Gaps = 38/338 (11%)

Query: 1   MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60
           M + VNTN++++T Q  L KA   L TSM+RLS+G  INSAKD+A+GLQISNRLT+Q  G
Sbjct: 1   MALTVNTNIASITTQNGLGKAANSLQTSMQRLSTGLSINSAKDNASGLQISNRLTSQING 60

Query: 61  LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120
           L  A++NANDGISIAQTAEGAM  ST ILQ+MR LAL SA G+ S ++R +  EE  AL 
Sbjct: 61  LGQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALT 120

Query: 121 DELNRIAETTSFGGRKLLNGSFGEASFQIGSSSGEAIIMGLTSVRADDFRMGGQSFIAEQ 180
            EL RI++TT+FGG+KLL+GS+G  + Q+G+++ E I + L +V A++  +G Q      
Sbjct: 121 SELTRISQTTTFGGQKLLDGSYGTKAIQVGANANETINLSLDNVAANN--IGSQ------ 172

Query: 181 PKTKEWGVPPTARDLKFEFTKKDGEAVVLDIIAKDGDDIEELATYINGQTDLFKASVDQE 240
            + K  GV P+A  +        G      +    G   + +A+ +NG      AS   E
Sbjct: 173 -QIKSVGVAPSASGVAGGVIGITGNGQTNSVTVAAGSSAKTIASQLNGAVGGLSASASTE 231

Query: 241 GKLQIFVAEPNIEGNFNISGGLATELGLNGGPGVKTTVQDIDITSVGGSQNAVGIIDAA- 299
            +  +                         G   KT      +T  G +    G+ D A 
Sbjct: 232 AQFVV-------------------------GAAAKTAPATFSMTVGGQTTTFTGVTDTAS 266

Query: 300 -LKYVDSQRADLGAKQN--RLSHSISNLSNIQENVEAS 334
               + S  A LG   N      S+S  S+  EN+E S
Sbjct: 267 LADQLKSNAAKLGISVNFDEAKQSLSVKSDSGENLEFS 304



 Score =  111 bits (278), Expect = 4e-29
 Identities = 95/329 (28%), Positives = 150/329 (45%), Gaps = 23/329 (6%)

Query: 67  NANDGISIAQTAEGAMNESTSILQRMRDLALQS--ANGTNSASERQALNEESVALQDELN 124
           NAN+ I+++     A N  +  ++ +      S  A G    +     N  +VA      
Sbjct: 152 NANETINLSLDNVAANNIGSQQIKSVGVAPSASGVAGGVIGITGNGQTNSVTVAAGSSAK 211

Query: 125 RIAETTSFGGRKLLNGSFGEASFQIGSSSGEAIIMGLTSVRADDFRMGGQSFIAEQPKTK 184
            IA   +     L   +  EA F +G+++  A      +V        G +  A      
Sbjct: 212 TIASQLNGAVGGLSASASTEAQFVVGAAAKTAPATFSMTVGGQTTTFTGVTDTASLADQL 271

Query: 185 EWGVPPTARDLKFEFTKKDGEAVVLDIIAKDGDDIEELATYINGQTDLFKASVDQEGKLQ 244
           +         + F+  K+      L + +  G+++E  A    G   +  A+ D  G   
Sbjct: 272 KSNAAKLGISVNFDEAKQS-----LSVKSDSGENLEFSAATAAGSITV--ATKDGSGSYG 324

Query: 245 IFVAEPN---IEGNFNISGGLATELGLNGGPGV-----------KTTVQDIDITSVGGSQ 290
             VA  N     G  N+       L   G  G+           KT+V   D+TS   +Q
Sbjct: 325 SAVAIANGLKATGAVNLDSSKGYALNGAGVTGLFAATGTAAASAKTSVAQTDVTSAFNAQ 384

Query: 291 NAVGIIDAALKYVDSQRADLGAKQNRLSHSISNLSNIQENVEASKSRIKDTDFAKETTQL 350
           +A+ +ID A+  +DS R+ LGA QNRL+ ++ NL+NIQ+N  A++S ++DTDFA ET +L
Sbjct: 385 SAIAVIDKAIGGIDSVRSGLGAVQNRLTTTVDNLTNIQKNSTAARSTVQDTDFAAETAEL 444

Query: 351 TKSQILQQAGTSILAQAKQLPNSAISLLQ 379
           TK Q LQ A T+IL+QA QLP++ + LLQ
Sbjct: 445 TKQQTLQSAATAILSQANQLPSAVLKLLQ 473