Pairwise Alignments

Query, 379 a.a., flagellin A from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., flagellin, filament structural protein from Pseudomonas putida KT2440

 Score =  198 bits (503), Expect = 4e-55
 Identities = 101/170 (59%), Positives = 132/170 (77%)

Query: 1   MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60
           M + VNTN+++M+ Q+ L K++  L T+M RLSSG +INSAKDDAAGLQISNRLT Q +G
Sbjct: 1   MALTVNTNITSMSVQKNLNKSSDALGTTMGRLSSGLKINSAKDDAAGLQISNRLTTQIKG 60

Query: 61  LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120
           L VA++NANDGISIAQTAEGAM  S +I+QRMR+LALQSANG+NS  +R ++ +E  AL 
Sbjct: 61  LSVAVKNANDGISIAQTAEGAMATSGNIMQRMRELALQSANGSNSDDDRASMQQEFTALS 120

Query: 121 DELNRIAETTSFGGRKLLNGSFGEASFQIGSSSGEAIIMGLTSVRADDFR 170
            EL RIA TT+FGGR LL+G+F  +SFQ+G++S E+I  G+  V A   +
Sbjct: 121 GELTRIANTTTFGGRNLLDGTFSGSSFQVGANSNESISFGMKDVSATSMK 170



 Score =  118 bits (295), Expect = 6e-31
 Identities = 70/179 (39%), Positives = 108/179 (60%), Gaps = 10/179 (5%)

Query: 209 LDIIAKDGDDIEELATYINGQTDLFKASV---DQEGKLQIFVAEPNIEGNFNISGGLATE 265
           +++  K GDD++ +A  IN  +    ASV        L +F  +     + +   GLA  
Sbjct: 509 VEVKFKKGDDMDSIAASINAASTGVNASVVVNAGSSTLSLFADQDITVADGSNGTGLAA- 567

Query: 266 LGLNGGPG------VKTTVQDIDITSVGGSQNAVGIIDAALKYVDSQRADLGAKQNRLSH 319
           LGL    G      +++TV +++IT    +Q A+ ++D A++ +DSQR+ LGA QNR   
Sbjct: 568 LGLTAVAGKTSAVEMESTVSNLNITDAQSAQQAIQVLDGAMQSLDSQRSQLGAVQNRFDS 627

Query: 320 SISNLSNIQENVEASKSRIKDTDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLL 378
           +++NL +I EN  A++SRI+D DFA ET +L+K Q LQQA T+IL+QA QLP+S + LL
Sbjct: 628 TVANLQSISENSTAARSRIQDADFAAETAELSKQQTLQQASTAILSQANQLPSSVLKLL 686



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 4   NVNTNVSAMTAQRYLTKATGELNTSMERLS--SGNRINSAKDDAAGLQ-----ISNRLTA 56
           N N  +S           +G +   M  L+  S N  NS  DD A +Q     +S  LT 
Sbjct: 67  NANDGISIAQTAEGAMATSGNIMQRMRELALQSANGSNS-DDDRASMQQEFTALSGELTR 125

Query: 57  QSRGLDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGT-NSASERQALNEE 115
            +       RN  DG     + +   N + SI   M+D++  S  G  N AS    +   
Sbjct: 126 IANTTTFGGRNLLDGTFSGSSFQVGANSNESISFGMKDVSATSMKGNYNEASVAGGVATL 185

Query: 116 SVALQDELNRIAETTSFGGRKLLNGSFGEASFQ---IGSSSGEAII 158
             ++     +     +      + G+ G   F    IG+++G  ++
Sbjct: 186 QASVTGAAGKFGTNNAGSTSASVVGTAGAGVFDKPTIGAAAGNLVL 231