Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 60.1 bits (144), Expect = 7e-14
 Identities = 70/300 (23%), Positives = 126/300 (42%), Gaps = 35/300 (11%)

Query: 59  PDNRRLSELLETWWQVHG---HTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRAS 115
           PD   + + L+T W   G   +T+ S    YR     + +L + +A       +++F   
Sbjct: 7   PDQGLVEQFLDTMWFERGLAENTVAS----YRND---LSKLLEWMAQNQYRLDFISFAGL 59

Query: 116 RVSHFNKENKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLD 175
           +        ++  PT +   L+ +  +F  L + K     +P   +   K+  R    L 
Sbjct: 60  QEYQSWLSEQNYKPTSKARMLSAIRRLFQYLHREKV-RADDPSALLVSPKLPTRLPKDLS 118

Query: 176 KADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFK-LTFV 234
           +A ++  L        D +S        + ++  ATG R++E +SL    +S  + +  V
Sbjct: 119 EAQVEALLSA-----PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRV 173

Query: 235 ETKGKRIRSVPISENLY----------KEIMLASSSSTKIFSTTYGSA-------HRYIK 277
             KG + R VP+ EN            + ++L   +S  +F ++ G         HR   
Sbjct: 174 MGKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKH 233

Query: 278 KALPDYVP-EGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336
            A+   +  E  + HVLRH FATH +    D+ ++Q +LGH  +  T  Y H + + L Q
Sbjct: 234 YAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQ 293